Publications

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Book Chapter
Serra F, Arbiza L, Dopazo H. Genómica Comparativa y Selección Natural. Aplicaciones en el Genoma Humano. Capítulo 1.6. In: Dopazo H, Navarro A, eds. Evolución y Adaptacón. 150 años después del Origen de las Especies. Evolución y Adaptacón. 150 años después del Origen de las Especies. Valencia: Obrapropia.; 2009:51-59.
Huynen MA, Snel B, T G. Reliable and specific protein function prediction by combining homology with genomic(s) context. In: Discovery of biomolecular mechanisms with theoretical data analyses. Discovery of biomolecular mechanisms with theoretical data analyses. F. Eisenhaber, Landes Bioscience; 2006. Available at: http://www.landesbioscience.com/iu/output.php?id=479.
Antón J, Peña A, Valens M, et al. Salinibacter ruber: genomics and biogeography. In: Adaptation to life in high salt concentrations in Archaea, Bacteria and Eukarya.Vol 9. Adaptation to life in high salt concentrations in Archaea, Bacteria and Eukarya. Dordrecht, Netherlands: Nina Gunde-Cimerman, Ana Plemenitas, and Aharon Oren. Kluwer Academic Publishers; 2005:257-266.
Marti-Renom MA, Capriotti E, Shindyalov I, Bourne P. Structural Comparison and Alignment. In: Structural Bioinformatics. 2ndnd ed. Structural Bioinformatics. New Jersey. USA: Wiley-Blackwell; 2009. Available at: http://www.amazon.com/gp/product/0470181052/.
Al-Shahrour F, Herrero J, Mateos A, Santoyo J, Díaz-Uriarte R, Dopazo J. Using Gene Ontology on genome-scale studies to find significant associations of biologically relevant terms to group of genes. In: Neural Networks for Signal Processing XIII. Neural Networks for Signal Processing XIII. New York, USA: IEEE Press; 2003:43-52.
Conference Paper
Gonzalez CY, Bleda M, Salavert F, Sánchez R, Dopazo J, Medina I. Multicore and Cloud-based Solutions for Genomic Variant Analysis. In: Proceedings of the 18th International Conference on Parallel Processing Workshops. Proceedings of the 18th International Conference on Parallel Processing Workshops. Berlin, Heidelberg: Springer-Verlag; 2013. doi:10.1007/978-3-642-36949-0_30.
Gonzalez CY, Bleda M, Salavert F, Sánchez R, Dopazo J, Medina I. Multicore and Cloud-based Solutions for Genomic Variant Analysis. In: Proceedings of the 18th International Conference on Parallel Processing Workshops. Proceedings of the 18th International Conference on Parallel Processing Workshops. Berlin, Heidelberg: Springer-Verlag; 2013. doi:10.1007/978-3-642-36949-0_30.
Silbiger V, Luchessi A, Hirata R, et al. Peripheral blood cells transcriptome to study new biomarkers for myocardial infarction follow up. In: ; 2009.
Silbiger V, Luchessi A, Hirata R, et al. Peripheral blood cells transcriptome to study new biomarkers for myocardial infarction follow up. In: ; 2009.
Silbiger V, Luchessi A, Hirata R, et al. Peripheral blood cells transcriptome to study new biomarkers for myocardial infarction follow up. In: ; 2009.
Journal Article
Dopazo J, Amadoz A, Bleda M, et al. 267 Spanish exomes reveal population-specific differences in disease-related genetic variation. Molecular biology and evolution. 2016. doi:10.1093/molbev/msw005.
Dopazo J, Amadoz A, Bleda M, et al. 267 Spanish exomes reveal population-specific differences in disease-related genetic variation. Molecular biology and evolution. 2016. doi:10.1093/molbev/msw005.
Tárraga J, Arnau V, Martinez H, et al. Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. Bioinformatics (Oxford, England). 2014;30:3396-3398. doi:10.1093/bioinformatics/btu553.
Salavert F, Hidago MR, Amadoz A, et al. Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models. Nucleic acids research. 2016. doi:10.1093/nar/gkw369.
Madhusudhan MS, Webb BM, Marti-Renom MA, Eswar N, Sali A. Alignment of multiple protein structures based on sequence and structure features. Protein engineering, design & selection : PEDS. 2009;22:569-74.
Marti-Renom MA, Madhusudhan MS, Sali A. Alignment of protein sequences by their profiles. Protein Sci. 2004;13:1071-87. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15044736.
Terol J, Conesa A, Colmenero JM, et al. Analysis of 13000 unique Citrus clusters associated with fruit quality, production and salinity tolerance. BMC Genomics. 2007;8:31. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17254327.
Marti-Renom MA, Rossi A, Al-Shahrour F, et al. The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. BMC Bioinformatics. 2007;8 Suppl 4:S4. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=17570147.
Ariño J, Casamayor A, Pérez JPerez, et al. Assessing Differential Expression Measurements by Highly Parallel Pyrosequencing and DNA Microarrays: A Comparative Study. Omics : a journal of integrative biology. 2013. doi:10.1089/omi.2011.0065.
Munro SA, Lund SP, P Pine S, et al. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature communications. 2014;5:5125. doi:10.1038/ncomms6125.
Munro SA, Lund SP, P Pine S, et al. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature communications. 2014;5:5125. doi:10.1038/ncomms6125.
Munro SA, Lund SP, P Pine S, et al. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature communications. 2014;5:5125. doi:10.1038/ncomms6125.
Munro SA, Lund SP, P Pine S, et al. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature communications. 2014;5:5125. doi:10.1038/ncomms6125.
Munro SA, Lund SP, P Pine S, et al. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature communications. 2014;5:5125. doi:10.1038/ncomms6125.
Munro SA, Lund SP, P Pine S, et al. Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures. Nature communications. 2014;5:5125. doi:10.1038/ncomms6125.