Publications

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2011
Yung S, Ledran M, Moreno-Gimeno I, et al. Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells. Human molecular genetics. 2011;20:4932-46.
Garrido-Gomez T, Dominguez F, Lopez JAntonio, et al. Modeling human endometrial decidualization from the interaction between proteome and secretome. The Journal of clinical endocrinology and metabolism. 2011;96:706-16.
del Pozo MGonzález-, Borrego S, Barragán I, et al. Mutation screening of multiple genes in spanish patients with autosomal recessive retinitis pigmentosa by targeted resequencing. PloS one. 2011;6:e27894.
Serra F, Arbiza L, Dopazo J, Dopazo H. Natural selection on functional modules, a genome-wide analysis. PLoS computational biology. 2011;7:e1001093. Available at: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001093.
Bañó-Polo M, Baldin F, Tamborero S, Marti-Renom MA, Mingarro I. N-glycosylation efficiency is determined by the distance to the C-terminus and the amino acid preceding an Asn-Ser-Thr sequon. Protein science : a publication of the Protein Society. 2011;20:179-86.
García-Alcalde F, García-López F, Dopazo J, Conesa A. Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data. Bioinformatics (Oxford, England). 2011;27:137-9.
Sánchez R, Serra F, Tárraga J, et al. Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic acids research. 2011;39:W470-4. Available at: http://www.ncbi.nlm.nih.gov/pubmed/21646336.
Cardona F, Sánchez-Mut JVicente, Dopazo H, Pérez-Tur J. Phylogenetic and in silico structural analysis of the Parkinson disease-related kinase PINK1. Human mutation. 2011;32:369-78. doi:10.1002/humu.21444.
Durban J, Juárez P, Angulo Y, et al. Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing. BMC genomics. 2011;12:259.
Marigorta UM, Lao O, Casals F, et al. Recent human evolution has shaped geographical differences in susceptibility to disease. BMC genomics. 2011;12:55.
Martín-Trillo M, Grandío EGonzález, Serra F, et al. Role of tomato BRANCHED1-like genes in the control of shoot branching. The Plant journal : for cell and molecular biology. 2011;67:701-14. doi:10.1111/j.1365-313X.2011.04629.x.
Lüke L, Vicens A, Serra F, et al. Sexual selection halts the relaxation of protamine 2 among rodents. PloS one. 2011;6:e29247. doi:10.1371/journal.pone.0029247.
Baù D, Marti-Renom MA. Structure determination of genomic domains by satisfaction of spatial restraints. Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology. 2011;19:25-35.
Cuenca-Bono B, García-Molinero V, Pascual-García P, et al. SUS1 introns are required for efficient mRNA nuclear export in yeast. Nucleic acids research. 2011;39:8599-611.
Baù D, Sanyal A, Lajoie BR, et al. The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules. Nature structural & molecular biology. 2011;18:107-14.
2010
Medina I, Carbonell J, Pulido L, et al. Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Research. 2010;38:W210-W213. Featured in NAR. Available at: http://nar.oxfordjournals.org/content/38/suppl_2/W210.full.
Javierre BM, Fernandez AF, Richter J, et al. Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus. Genome research. 2010;20:170-9.
Bediaga NG, Acha A, Guerra I, et al. DNA methylation epigenotypes in breast cancer molecular subtypes. Breast cancer research : BCR. 2010;12:R77. Available at: http://breast-cancer-research.com/content/12/5/R77.
Huerta-Cepas J, Dopazo J, Gabaldón T. ETE: a python Environment for Tree Exploration. BMC bioinformatics. 2010;11:24.
Bonifaci N, Górski B, Masojć B, et al. Exploring the link between germline and somatic genetic alterations in breast carcinogenesis. PloS one. 2010;5:e14078. doi:doi:10.1371/journal.pone.0014078.
Peña A, Teeling H, Huerta-Cepas J, et al. Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. The ISME journal. 2010.
Moreno-Manzano V, Rodríguez-Jiménez FJ, Aceña-Bonilla JL, et al. FM19G11, a new hypoxia-inducible factor (HIF) modulator, affects stem cell differentiation status. The Journal of biological chemistry. 2010;285:1333-42.
Shi W, Bessarabova M, Dosymbekov D, et al. Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes. The pharmacogenomics journal. 2010;10:310-23. Available at: http://www.nature.com/tpj/journal/v10/n4/abs/tpj201035a.html.
Minguez P, Dopazo J. Functional genomics and networks: new approaches in the extraction of complex gene modules. Expert review of proteomics. 2010;7:55-63.
Galan A, Montaner D, M Póo E, et al. Functional genomics of 5- to 8-cell stage human embryos by blastomere single-cell cDNA analysis. PloS one. 2010;5:e13615.