| Title | Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. |
| Publication Type | Journal Article |
| Year of Publication | 2011 |
| Authors | Sánchez, R, Serra, F, Tárraga, J, Medina, I, Carbonell, J, Pulido, L, De Maria, A, Capella-Gutíerrez, S, Huerta-Cepas, J, Gabaldón, T, Dopazo, J, Dopazo, H |
| Journal | Nucleic Acids Res |
| Volume | 39 |
| Issue | Web Server issue |
| Pagination | W470-4 |
| Date Published | 2011 Jul |
| ISSN | 1362-4962 |
| Keywords | Evolution, Molecular; Genomics; Internet; Phylogeny; Sequence Alignment; Software |
| Abstract | Phylemon 2.0 is a new release of the suite of web tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. It has been designed as a response to the increasing demand of molecular sequence analyses for experts and non-expert users. Phylemon 2.0 has several unique features that differentiates it from other similar web resources: (i) it offers an integrated environment that enables evolutionary analyses, format conversion, file storage and edition of results; (ii) it suggests further analyses, thereby guiding the users through the web server; and (iii) it allows users to design and save phylogenetic pipelines to be used over multiple genes (phylogenomics). Altogether, Phylemon 2.0 integrates a suite of 30 tools covering sequence alignment reconstruction and trimming; tree reconstruction, visualization and manipulation; and evolutionary hypotheses testing. |
| DOI | 10.1093/nar/gkr408 |
| Alternate Journal | Nucleic Acids Res |
| PubMed ID | 21646336 |
| PubMed Central ID | PMC3125789 |
