Title | Reporting guidelines for human microbiome research: the STORMS checklist. |
Publication Type | Journal Article |
Year of Publication | 2021 |
Authors | Mirzayi, C, Renson, A, Zohra, F, Elsafoury, S, Geistlinger, L, Kasselman, LJ, Eckenrode, K, van de Wijgert, J, Loughman, A, Marques, FZ, MacIntyre, DA, Arumugam, M, Azhar, R, Beghini, F, Bergstrom, K, Bhatt, A, Bisanz, JE, Braun, J, Bravo, HCorrada, Buck, GA, Bushman, F, Casero, D, Clarke, G, Collado, MCarmen, Cotter, PD, Cryan, JF, Demmer, RT, Devkota, S, Elinav, E, Escobar, JS, Fettweis, J, Finn, RD, Fodor, AA, Forslund, S, Franke, A, Furlanello, C, Gilbert, J, Grice, E, Haibe-Kains, B, Handley, S, Herd, P, Holmes, S, Jacobs, JP, Karstens, L, Knight, R, Knights, D, Koren, O, Kwon, DS, Langille, M, Lindsay, B, McGovern, D, McHardy, AC, McWeeney, S, Mueller, NT, Nezi, L, Olm, M, Palm, N, Pasolli, E, Raes, J, Redinbo, MR, Rühlemann, M, R Sartor, B, Schloss, PD, Schriml, L, Segal, E, Shardell, M, Sharpton, T, Smirnova, E, Sokol, H, Sonnenburg, JL, Srinivasan, S, Thingholm, LB, Turnbaugh, PJ, Upadhyay, V, Walls, RL, Wilmes, P, Yamada, T, Zeller, G, Zhang, M, Zhao, N, Zhao, L, Bao, W, Culhane, A, Devanarayan, V, Dopazo, J, Fan, X, Fischer, M, Jones, W, Kusko, R, Mason, CE, Mercer, TR, Sansone, S-A, Scherer, A, Shi, L, Thakkar, S, Tong, W, Wolfinger, R, Hunter, C, Segata, N, Huttenhower, C, Dowd, JB, Jones, HE, Waldron, L |
Corporate Authors | Genomic Standards Consortium, Massive Analysis and Quality Control Society |
Journal | Nat Med |
Volume | 27 |
Issue | 11 |
Pagination | 1885-1892 |
Date Published | 2021 11 |
ISSN | 1546-170X |
Keywords | Computational Biology; Dysbiosis; Humans; Microbiota; Observational Studies as Topic; Research Design; Translational Science, Biomedical |
Abstract | The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called 'Strengthening The Organization and Reporting of Microbiome Studies' (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results. |
DOI | 10.1038/s41591-021-01552-x |
Alternate Journal | Nat Med |
PubMed ID | 34789871 |
Grant List | U01 CA230551 / CA / NCI NIH HHS / United States |