| Title | Interoperability with Moby 1.0–it’s better than sharing your toothbrush! |
| Publication Type | Journal Article |
| Year of Publication | 2008 |
| Authors | Wilkinson, MD, Senger, M, Kawas, E, Bruskiewich, R, Gouzy, J, Noirot, C, Bardou, P, Ng, A, Haase, D, A. Ede, S, Wang, D, Gibbons, F, Gordon, PM, Sensen, CW, Carrasco, JM, Fernandez, JM, Shen, L, Links, M, Ng, M, Opushneva, N, Neerincx, PB, Leunissen, JA, Ernst, R, Twigger, S, Usadel, B, Good, B, Wong, Y, Stein, L, Crosby, W, Karlsson, J, Royo, R, Parraga, I, Ramirez, S, Gelpi, JL, Trelles, O, Pisano, DG, Jimenez, N, Kerhornou, A, Rosset, R, Zamacola, L, Tarraga, J, Huerta-Cepas, J, Carazo, JM, Dopazo, J, Guigo, R, Navarro, A, Orozco, M, Valencia, A, Claros, MG, Perez, AJ, Aldana, J, Rojano, MM, R. Cruz, F-S, Navas, I, Schiltz, G, Farmer, A, Gessler, D, Schoof, H, Groscurth, A |
| Journal | Brief Bioinform |
| Volume | 9 |
| Pagination | 220-31 |
| Keywords | Computational Biology/*methods *Database Management Systems *Databases; Factual Information Storage and Retrieval/*methods *Internet *Programming Languages Systems Integration |
| Abstract | The BioMoby project was initiated in 2001 from within the model organism database community. It aimed to standardize methodologies to facilitate information exchange and access to analytical resources, using a consensus driven approach. Six years later, the BioMoby development community is pleased to announce the release of the 1.0 version of the interoperability framework, registry Application Programming Interface and supporting Perl and Java code-bases. Together, these provide interoperable access to over 1400 bioinformatics resources worldwide through the BioMoby platform, and this number continues to grow. Here we highlight and discuss the features of BioMoby that make it distinct from other Semantic Web Service and interoperability initiatives, and that have been instrumental to its deployment and use by a wide community of bioinformatics service providers. The standard, client software, and supporting code libraries are all freely available at http://www.biomoby.org/. |
| Notes | BioMoby Consortium Wilkinson, Mark D Senger, Martin Kawas, Edward Bruskiewich, Richard Gouzy, Jerome Noirot, Celine Bardou, Philippe Ng, Ambrose Haase, Dirk Saiz, Enrique de Andres Wang, Dennis Gibbons, Frank Gordon, Paul M K Sensen, Christoph W Carrasco, Jose Manuel Rodriguez Fernandez, Jose M Shen, Lixin Links, Matthew Ng, Michael Opushneva, Nina Neerincx, Pieter B T Leunissen, Jack A M Ernst, Rebecca Twigger, Simon Usadel, Bjorn Good, Benjamin Wong, Yan Stein, Lincoln Crosby, William Karlsson, Johan Royo, Romina Parraga, Ivan Ramirez, Sergio Gelpi, Josep Lluis Trelles, Oswaldo Pisano, David G Jimenez, Natalia Kerhornou, Arnaud Rosset, Roman Zamacola, Leire Tarraga, Joaquin Huerta-Cepas, Jaime Carazo, Jose Maria Dopazo, Joaquin Guigo, Roderic Navarro, Arcadi Orozco, Modesto Valencia, Alfonso Claros, M Gonzalo Perez, Antonio J Aldana, Jose Rojano, M Mar Fernandez-Santa Cruz, Raul Navas, Ismael Schiltz, Gary Farmer, Andrew Gessler, Damian Schoof, Heiko Groscurth, Andreas Research Support, Non-U.S. Gov’t Review England Briefings in bioinformatics Brief Bioinform. 2008 May;9(3):220-31. Epub 2008 Jan 31. |
| URL | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18238804 |
