Towards a metagenomics machine learning interpretable model for understanding the transition from adenoma to colorectal cancer. Submitted by jdopazo on Mon, 01/24/2022 - 14:22 Casimiro-Soriguer CS, Loucera C, Peña-Chilet M, Dopazo J. Towards a metagenomics machine learning interpretable model for understanding the transition from adenoma to colorectal cancer. Sci Rep. 2022;12(1):450. doi:10.1038/s41598-021-04182-y.
Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling. Submitted by jdopazo on Mon, 01/24/2022 - 14:04 López-Sánchez M, Loucera C, Peña-Chilet M, Dopazo J. Discovering potential interactions between rare diseases and COVID-19 by combining mechanistic models of viral infection with statistical modeling. Hum Mol Genet. 2022. doi:10.1093/hmg/ddac007.
CIBERER: Spanish National Network for Research on Rare Diseases: a highly productive collaborative initiative. Submitted by jdopazo on Mon, 01/24/2022 - 14:03 Luque J, Mendes I, Gómez B, et al. CIBERER: Spanish National Network for Research on Rare Diseases: a highly productive collaborative initiative. Clin Genet. 2022. doi:10.1111/cge.14113.
Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data. Submitted by jdopazo on Wed, 01/05/2022 - 15:56 Gundogdu P, Loucera C, Alamo-Alvarez I, Dopazo J, Nepomuceno I. Integrating pathway knowledge with deep neural networks to reduce the dimensionality in single-cell RNA-seq data. BioData Min. 2022;15(1):1. doi:10.1186/s13040-021-00285-4.
Mapping the human genetic architecture of COVID-19. Submitted by rgarcia on Mon, 12/20/2021 - 09:31 Mapping the human genetic architecture of COVID-19. Nature. 2021;600(7889):472-477. doi:10.1038/s41586-021-03767-x.
Real world evidence of calcifediol or vitamin D prescription and mortality rate of COVID-19 in a retrospective cohort of hospitalized Andalusian patients. Submitted by rgarcia on Wed, 12/15/2021 - 09:47 Loucera C, Peña-Chilet M, Esteban-Medina M, et al. Real world evidence of calcifediol or vitamin D prescription and mortality rate of COVID-19 in a retrospective cohort of hospitalized Andalusian patients. Sci Rep. 2021;11(1):23380. doi:10.1038/s41598-021-02701-5.
Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences. Submitted by rgarcia on Wed, 12/15/2021 - 09:47 Ortuno FM, Loucera C, Casimiro-Soriguer CS, et al. Highly accurate whole-genome imputation of SARS-CoV-2 from partial or low-quality sequences. Gigascience. 2021;10(12). doi:10.1093/gigascience/giab078.
Deciphering Genomic Heterogeneity and the Internal Composition of Tumour Activities through a Hierarchical Factorisation Model Submitted by jdopazo on Sat, 12/04/2021 - 12:31 Carbonell-Caballero J, López-Quílez A, Conesa D, Dopazo J. Deciphering Genomic Heterogeneity and the Internal Composition of Tumour Activities through a Hierarchical Factorisation Model. Mathematics. 2021;9(21):2833. doi:10.3390/math9212833.
Reporting guidelines for human microbiome research: the STORMS checklist. Submitted by rgarcia on Fri, 11/19/2021 - 10:42 Mirzayi C, Renson A, Zohra F, et al. Reporting guidelines for human microbiome research: the STORMS checklist. Nat Med. 2021;27(11):1885-1892. doi:10.1038/s41591-021-01552-x.
Mutational Characterization of Cutaneous Melanoma Supports Divergent Pathways Model for Melanoma Development. Submitted by rgarcia on Wed, 11/10/2021 - 08:30 Millán-Esteban D, Peña-Chilet M, García-Casado Z, et al. Mutational Characterization of Cutaneous Melanoma Supports Divergent Pathways Model for Melanoma Development. Cancers (Basel). 2021;13(20). doi:10.3390/cancers13205219.