Publications

Export 425 results:
Author Title Type [ Year(Asc)]
2009
Nobre LS, Al-Shahrour F, Dopazo J, Saraiva LM. Exploring the antimicrobial action of a carbon monoxide-releasing compound through whole-genome transcription profiling of Escherichia coli. Microbiology. 2009;155:813-24. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19246752.
Dopazo J. Formulating and testing hypotheses in functional genomics. Artif Intell Med. 2009;45:97-107. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18789659.
Dopazo J. Formulating and testing hypotheses in functional genomics. Artif Intell Med. 2009;45(2-3):97-107. doi:10.1016/j.artmed.2008.08.003.
Nueda MJosé, Sebastián P, Tarazona S, et al. Functional assessment of time course microarray data. BMC Bioinformatics. 2009;10 Suppl 6:S9. doi:10.1186/1471-2105-10-S6-S9.
Aggarwal M, Sánchez-Beato M, Gómez-López G, et al. Functional signatures identified in B-cell non-Hodgkin lymphoma profiles. Leuk Lymphoma. 2009;50(10):1699-708. doi:10.1080/10428190903189035.
Montaner D, Minguez P, Al-Shahrour F, Dopazo J. Gene set internal coherence in the context of functional profiling. BMC Genomics. 2009;10:197. doi:10.1186/1471-2164-10-197.
Medina I, Montaner D, Bonifaci N, et al. Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucl. Acids Res. 2009;37:W340-344. doi:10.1093/nar/gkp481.
Medina I, Montaner D, Bonifaci N, et al. Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Res. 2009;37(Web Server issue):W340-4. doi:10.1093/nar/gkp481.
Serra F, Arbiza L, Dopazo H. Genómica Comparativa y Selección Natural. Aplicaciones en el Genoma Humano. Capítulo 1.6. In: Dopazo H, Navarro A, eds. Evolución y Adaptacón. 150 años después del Origen de las Especies. Evolución y Adaptacón. 150 años después del Origen de las Especies. Valencia: Obrapropia.; 2009:51-59.
Orti L, Carbajo RJ, Pieper U, et al. A kernel for open source drug discovery in tropical diseases. PLoS Negl Trop Dis. 2009;3:e418. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19381286.
Orti L, Carbajo RJ, Pieper U, et al. A kernel for the Tropical Disease Initiative. Nat Biotechnol. 2009;27:320-1. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19352362.
Brumos J, Colmenero-Flores JM, Conesa A, et al. Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks. Funct Integr Genomics. 2009. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19190944.
Pieper U, Eswar N, Webb BM, et al. MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 2009;37:D347-54. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18948282.
Jones AR, Lister AL, Hermida L, et al. Modeling and managing experimental data using FuGE. OMICS. 2009;13:239-51.
Fornes O, Aragues R, Espadaler J, Marti-Renom MA, Sali A, Oliva B. ModLink+: Improving fold recognition by using protein-protein interactions. Bioinformatics. 2009. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19357100.
van Heerden JH, Conesa A, Stein DJ, Montaner D, Russell V, Illing N. Parallel changes in gene expression in peripheral blood mononuclear cells and the brain after maternal separation in the mouse. BMC Res Notes. 2009;2:195.
Reiss JO, Burke AC, Archer C, et al. Pere Alberch: Originator of EvoDevo. Biological Theory. 2009;3:351-353.
Silbiger V, Luchessi A, Hirata R, et al. Peripheral blood cells transcriptome to study new biomarkers for myocardial infarction follow up. In: ; 2009.
Minguez P, Dopazo J. Protein Interactions for Functional Genomics. In: Li X-L, Ng S-K, eds. Biological Data Mining in Protein Interaction Networks. Biological Data Mining in Protein Interaction Networks. Hershey, USA: Idea Group Inc (IGI); 2009:223-238. Available at: http://books.google.es/books?id=pNyCy5GsqtkC.
Capriotti E, Marti-Renom MA. SARA: a server for function annotation of RNA structures. Nucl. Acids Res. 2009:gkp433. doi:10.1093/nar/gkp433.
Martin-Coello J, Dopazo H, Arbiza L, Ausio J, Roldan ER, Gomendio M. Sexual selection drives weak positive selection in protamine genes and high promoter divergence, enhancing sperm competitiveness. Proc Biol Sci. 2009. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=19364735.
Minguez P, Götz S, Montaner D, Al-Shahrour F, Dopazo J. SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucleic Acids Res. 2009;37(Web Server issue):W109-14. doi:10.1093/nar/gkp402.
Minguez P, Gotz S, Montaner D, Al-Shahrour F, Dopazo J. SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucl. Acids Res. 2009;37:W109-114. doi:10.1093/nar/gkp402.
Birmingham A, Selfors LM, Forster T, et al. Statistical methods for analysis of high-throughput RNA interference screens. Nature Methods. 2009;6:569 - 575. Available at: http://dx.doi.org/10.1038/nmeth.1351.
Marti-Renom MA, Capriotti E, Shindyalov I, Bourne P. Structural Comparison and Alignment. In: Structural Bioinformatics. 2ndnd ed. Structural Bioinformatics. New Jersey. USA: Wiley-Blackwell; 2009. Available at: http://www.amazon.com/gp/product/0470181052/.