Publications

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Author Title Type [ Year(Desc)]
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2003
Díaz-Uriarte R, Al-Shahrour F, Dopazo J. Use of GO Terms to Understand the Biological Significance of Microarray Differential Gene Expression Data. In: Microarray data analysis III. Microarray data analysis III. Kluwer Academic, K. F. Johnson and S. M. Lin; 2003:233-247.
Al-Shahrour F, Herrero J, Mateos A, Santoyo J, Díaz-Uriarte R, Dopazo J. Using Gene Ontology on genome-scale studies to find significant associations of biologically relevant terms to group of genes. In: Neural Networks for Signal Processing XIII. Neural Networks for Signal Processing XIII. New York, USA: IEEE Press; 2003:43-52.
2004
Wang H, Azuaje F, Bodenreider O, Dopazo J. Gene expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationship. In: IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology.; 2004:25-31.
2005
Azuaje F, Dopazo J. Data analysis and visualisation in genomics and proteomics. In: Wiley, F. Azuaje and J. Dopazo; 2005.
Azuaje F, Dopazo J, Wang H. Data and Predictive Model Integration: an Overview of Key Concepts, Problems and Solutions. In: Data analysis and visualisation in genomics and proteomics. Data analysis and visualisation in genomics and proteomics. Wiley, F. Azuaje and J. Dopazo; 2005.
Azuaje F, Dopazo J. Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges. In: Data analysis and visualisation in genomics and proteomics. Data analysis and visualisation in genomics and proteomics. Wiley, F. Azuaje and J. Dopazo; 2005:3-9.
Al-Shahrour F, Dopazo J. Ontologies and functional genomics. In: Data analysis and visualisation in genomics and proteomics. Data analysis and visualisation in genomics and proteomics. Wiley, F. Azuaje and J. Dopazo; 2005:99-102.
Azuaje F, Al-Shahrour F, Dopazo J. Ontology-driven approaches to analyzing data in functional genomics. In: Bioinformatics and Drug Discovery. Bioinformatics and Drug Discovery. Totowa, NJ: The Humana Press Inc., R. Larson; 2005:67-86.
Antón J, Peña A, Valens M, et al. Salinibacter ruber: genomics and biogeography. In: Adaptation to life in high salt concentrations in Archaea, Bacteria and Eukarya.Vol 9. Adaptation to life in high salt concentrations in Archaea, Bacteria and Eukarya. Dordrecht, Netherlands: Nina Gunde-Cimerman, Ana Plemenitas, and Aharon Oren. Kluwer Academic Publishers; 2005:257-266.
2006
Dopazo H. La clasificación de los organismos. In: Invitación a la Biología. Invitación a la Biología. Buenos Aires: Curtis, Barnes, Schnek & Flores. 2da, Editorial Medica Panamericana; 2006.
Huynen MA, Snel B, T G. Reliable and specific protein function prediction by combining homology with genomic(s) context. In: Discovery of biomolecular mechanisms with theoretical data analyses. Discovery of biomolecular mechanisms with theoretical data analyses. F. Eisenhaber, Landes Bioscience; 2006. Available at: http://www.landesbioscience.com/iu/output.php?id=479.
2007
Dopazo J. Clustering - Class discovery in the post-genomic era. In: Fundamentals of data mining in genomics and proteomics. Fundamentals of data mining in genomics and proteomics. New York, USA: Springer-Verlag, W. Dubitzky, M. Granzow and D.P. Berrar; 2007.
Robledo M, González-Neira A, Dopazo J. f single nucleotide polymorphism arrays: Design, tools and applications. In: Microarray Technology Through Applications. Microarray Technology Through Applications. New York, USA: Taylor & Francis, F. Falciani; 2007.
Dopazo J, Al-Shahrour F. Functional annotation of microarray experiments. In: Microarray Technology Through Applications. Microarray Technology Through Applications. New York, USA: Taylor & Francis, F. Falciani; 2007.
Conesa A, Forment J, Gadea J, van Dijk J. Microarray Technology in Agricultural Research. In: Microarray Technology Through Applications. Microarray Technology Through Applications. F. Falciani. Publisher: Taylor and Francis Group; 2007:173-209.
Montaner D, Al-Shahrour F, Dopazo J. New Trends in the Analysis of Functional Genomic Data. In: Progress in Industrial Mathematics at ECMI 2006.Vol 12. Progress in Industrial Mathematics at ECMI 2006. Berlin: Springer; 2007:576-580. doi:10.1007/978-3-540-71992-2_94.
Gabaldón T, Huynen MA. Reconstruction of ancestral proteomes. In: Ancestral Sequence Reconstruction. Ancestral Sequence Reconstruction. Oxford: D. Liberles; 2007. Available at: http://www.us.oup.com/us/catalog/general/subject/LifeSciences/EvolutionaryBiology/?view=usa&ci=9780199299188.
2008
Capriotti E, Marti-Renom MA. Assessment of protein structure predictions. In: Computational Structural Biology. Computational Structural Biology. New Jersey, USA: World Scientific Publishing Company; 2008. Available at: http://www.amazon.com/dp/9812778772/.
Gabaldón T. Comparative genomics-based prediction of protein function. In: Methods in Molecular Biology.Vol 439. Methods in Molecular Biology. M. Starkey and R. Elaswarapu, Humana press; 2008. Available at: http://www.springerprotocols.com/Abstract/doi/10.1007/978-1-59745-188-8_26.
Gabaldón T, Gil R, Peretó J, Latorre A, Moya A. The core of a minimal gene set: insights from natural reduced genomes. In: Protocells: Bridging nonliving and living matter. Protocells: Bridging nonliving and living matter. USA: The MIT Press; 2008:347-366.
Dopazo J, Al-Shahrour F. Expression and Microarrays. In: Methods in Molecular Biology.Vol 453. Methods in Molecular Biology. NJ,: Humana Press; 2008:245-255. doi:10.1007/978-1-60327-429-6_12.