<?xml version="1.0" encoding="UTF-8"?><xml><records><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Lorente-Galdos, Belén</style></author><author><style face="normal" font="default" size="100%">Medina, Ignacio</style></author><author><style face="normal" font="default" size="100%">Morcillo-Suarez, Carlos</style></author><author><style face="normal" font="default" size="100%">Heredia, Txema</style></author><author><style face="normal" font="default" size="100%">Carreño-Torres, Angel</style></author><author><style face="normal" font="default" size="100%">Sangrós, Ricardo</style></author><author><style face="normal" font="default" size="100%">Alegre, Josep</style></author><author><style face="normal" font="default" size="100%">Pita, Guillermo</style></author><author><style face="normal" font="default" size="100%">Vellalta, Gemma</style></author><author><style face="normal" font="default" size="100%">Malats, Nuria</style></author><author><style face="normal" font="default" size="100%">Pisano, David G</style></author><author><style face="normal" font="default" size="100%">Joaquín Dopazo</style></author><author><style face="normal" font="default" size="100%">Navarro, Arcadi</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Select your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs.</style></title><secondary-title><style face="normal" font="default" size="100%">International journal of data mining and bioinformatics</style></secondary-title></titles><dates><year><style  face="normal" font="default" size="100%">2012</style></year><pub-dates><date><style  face="normal" font="default" size="100%">2012</style></date></pub-dates></dates><urls><web-urls><url><style face="normal" font="default" size="100%">http://inderscience.metapress.com/content/f76740x8071u513n/</style></url></web-urls></urls><volume><style face="normal" font="default" size="100%">6</style></volume><pages><style face="normal" font="default" size="100%">324-34</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">Association studies are the choice approach in the discovery of the genomic basis of complex traits. To carry out such analysis, researchers frequently need to (1) select optimally informative sets of Single Nucleotide Polymorphisms (SNPs) in candidate regions and (2) annotate the results of associations found by means of genome-wide SNP arrays. These are complex tasks, since many criteria have to be considered, including the SNPs’ functional properties, technological information and haplotype frequencies in given populations. SYSNPs implements algorithms that allow for efficient and simultaneous consideration of all the relevant criteria to obtain sets of SNPs that properly cover arbitrarily large lists of genes or genomic regions. Complementarily, SYSNPs allows for comprehensive functional annotation of SNPs linked to any given marker SNP. SYSNPs dramatically reduces the effort needed for SNP selection from days of searching various databases to a few minutes using a simple browser.</style></abstract></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Aggarwal, Mohit</style></author><author><style face="normal" font="default" size="100%">Sánchez-Beato, Margarita</style></author><author><style face="normal" font="default" size="100%">Gómez-López, Gonzalo</style></author><author><style face="normal" font="default" size="100%">Al-Shahrour, Fátima</style></author><author><style face="normal" font="default" size="100%">Martínez, Nerea</style></author><author><style face="normal" font="default" size="100%">Rodríguez, Antonia</style></author><author><style face="normal" font="default" size="100%">Ruiz-Ballesteros, Elena</style></author><author><style face="normal" font="default" size="100%">Camacho, Francisca I</style></author><author><style face="normal" font="default" size="100%">Pérez-Rosado, Alberto</style></author><author><style face="normal" font="default" size="100%">de la Cueva, Paloma</style></author><author><style face="normal" font="default" size="100%">Artiga, María J</style></author><author><style face="normal" font="default" size="100%">Pisano, David G</style></author><author><style face="normal" font="default" size="100%">Kimby, Eva</style></author><author><style face="normal" font="default" size="100%">Dopazo, Joaquin</style></author><author><style face="normal" font="default" size="100%">Villuendas, Raquel</style></author><author><style face="normal" font="default" size="100%">Piris, Miguel A</style></author></authors></contributors><titles><title><style face="normal" font="default" size="100%">Functional signatures identified in B-cell non-Hodgkin lymphoma profiles.</style></title><secondary-title><style face="normal" font="default" size="100%">Leuk Lymphoma</style></secondary-title><alt-title><style face="normal" font="default" size="100%">Leuk Lymphoma</style></alt-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">Adult</style></keyword><keyword><style  face="normal" font="default" size="100%">Cluster Analysis</style></keyword><keyword><style  face="normal" font="default" size="100%">Gene Expression Profiling</style></keyword><keyword><style  face="normal" font="default" size="100%">Gene Expression Regulation, Leukemic</style></keyword><keyword><style  face="normal" font="default" size="100%">Genetic Heterogeneity</style></keyword><keyword><style  face="normal" font="default" size="100%">Humans</style></keyword><keyword><style  face="normal" font="default" size="100%">Lymphoma, B-Cell</style></keyword><keyword><style  face="normal" font="default" size="100%">Neoplasm Proteins</style></keyword><keyword><style  face="normal" font="default" size="100%">Oligonucleotide Array Sequence Analysis</style></keyword><keyword><style  face="normal" font="default" size="100%">RNA, Messenger</style></keyword><keyword><style  face="normal" font="default" size="100%">RNA, Neoplasm</style></keyword><keyword><style  face="normal" font="default" size="100%">Transcription, Genetic</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2009</style></year><pub-dates><date><style  face="normal" font="default" size="100%">2009 Oct</style></date></pub-dates></dates><volume><style face="normal" font="default" size="100%">50</style></volume><pages><style face="normal" font="default" size="100%">1699-708</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">&lt;p&gt;Gene-expression profiling in B-cell lymphomas has provided crucial data on specific lymphoma types, which can contribute to the identification of essential lymphoma survival genes and pathways. In this study, the gene-expression profiling data of all major B-cell lymphoma types were analyzed by unsupervised clustering. The transcriptome classification so obtained, was explored using gene set enrichment analysis generating a heatmap for B-cell lymphoma that identifies common lymphoma survival mechanisms and potential therapeutic targets, recognizing sets of coregulated genes and functional pathways expressed in different lymphoma types. Some of the most relevant signatures (stroma, cell cycle, B-cell receptor (BCR)) are shared by multiple lymphoma types or subclasses. A specific attention was paid to the analysis of BCR and coregulated pathways, defining molecular heterogeneity within multiple B-cell lymphoma types.&lt;/p&gt;</style></abstract><issue><style face="normal" font="default" size="100%">10</style></issue><custom1><style face="normal" font="default" size="100%">https://www.ncbi.nlm.nih.gov/pubmed/19863341?dopt=Abstract</style></custom1></record><record><source-app name="Biblio" version="7.x">Drupal-Biblio</source-app><ref-type>17</ref-type><contributors><authors><author><style face="normal" font="default" size="100%">Wilkinson, Mark D</style></author><author><style face="normal" font="default" size="100%">Senger, Martin</style></author><author><style face="normal" font="default" size="100%">Kawas, Edward</style></author><author><style face="normal" font="default" size="100%">Bruskiewich, Richard</style></author><author><style face="normal" font="default" size="100%">Gouzy, Jerome</style></author><author><style face="normal" font="default" size="100%">Noirot, Celine</style></author><author><style face="normal" font="default" size="100%">Bardou, Philippe</style></author><author><style face="normal" font="default" size="100%">Ng, Ambrose</style></author><author><style face="normal" font="default" size="100%">Haase, Dirk</style></author><author><style face="normal" font="default" size="100%">Saiz, Enrique de Andres</style></author><author><style face="normal" font="default" size="100%">Wang, Dennis</style></author><author><style face="normal" font="default" size="100%">Gibbons, Frank</style></author><author><style face="normal" font="default" size="100%">Gordon, Paul M K</style></author><author><style face="normal" font="default" size="100%">Sensen, Christoph W</style></author><author><style face="normal" font="default" size="100%">Carrasco, Jose Manuel Rodriguez</style></author><author><style face="normal" font="default" size="100%">Fernández, José M</style></author><author><style face="normal" font="default" size="100%">Shen, Lixin</style></author><author><style face="normal" font="default" size="100%">Links, Matthew</style></author><author><style face="normal" font="default" size="100%">Ng, Michael</style></author><author><style face="normal" font="default" size="100%">Opushneva, Nina</style></author><author><style face="normal" font="default" size="100%">Neerincx, Pieter B T</style></author><author><style face="normal" font="default" size="100%">Leunissen, Jack A M</style></author><author><style face="normal" font="default" size="100%">Ernst, Rebecca</style></author><author><style face="normal" font="default" size="100%">Twigger, Simon</style></author><author><style face="normal" font="default" size="100%">Usadel, Bjorn</style></author><author><style face="normal" font="default" size="100%">Good, Benjamin</style></author><author><style face="normal" font="default" size="100%">Wong, Yan</style></author><author><style face="normal" font="default" size="100%">Stein, Lincoln</style></author><author><style face="normal" font="default" size="100%">Crosby, William</style></author><author><style face="normal" font="default" size="100%">Karlsson, Johan</style></author><author><style face="normal" font="default" size="100%">Royo, Romina</style></author><author><style face="normal" font="default" size="100%">Párraga, Iván</style></author><author><style face="normal" font="default" size="100%">Ramírez, Sergio</style></author><author><style face="normal" font="default" size="100%">Gelpi, Josep Lluis</style></author><author><style face="normal" font="default" size="100%">Trelles, Oswaldo</style></author><author><style face="normal" font="default" size="100%">Pisano, David G</style></author><author><style face="normal" font="default" size="100%">Jimenez, Natalia</style></author><author><style face="normal" font="default" size="100%">Kerhornou, Arnaud</style></author><author><style face="normal" font="default" size="100%">Rosset, Roman</style></author><author><style face="normal" font="default" size="100%">Zamacola, Leire</style></author><author><style face="normal" font="default" size="100%">Tárraga, Joaquín</style></author><author><style face="normal" font="default" size="100%">Huerta-Cepas, Jaime</style></author><author><style face="normal" font="default" size="100%">Carazo, Jose María</style></author><author><style face="normal" font="default" size="100%">Dopazo, Joaquin</style></author><author><style face="normal" font="default" size="100%">Guigó, Roderic</style></author><author><style face="normal" font="default" size="100%">Navarro, Arcadi</style></author><author><style face="normal" font="default" size="100%">Orozco, Modesto</style></author><author><style face="normal" font="default" size="100%">Valencia, Alfonso</style></author><author><style face="normal" font="default" size="100%">Claros, M Gonzalo</style></author><author><style face="normal" font="default" size="100%">Pérez, Antonio J</style></author><author><style face="normal" font="default" size="100%">Aldana, Jose</style></author><author><style face="normal" font="default" size="100%">Rojano, M  Mar</style></author><author><style face="normal" font="default" size="100%">Fernandez-Santa Cruz, Raul</style></author><author><style face="normal" font="default" size="100%">Navas, Ismael</style></author><author><style face="normal" font="default" size="100%">Schiltz, Gary</style></author><author><style face="normal" font="default" size="100%">Farmer, Andrew</style></author><author><style face="normal" font="default" size="100%">Gessler, Damian</style></author><author><style face="normal" font="default" size="100%">Schoof, Heiko</style></author><author><style face="normal" font="default" size="100%">Groscurth, Andreas</style></author></authors><translated-authors><author><style face="normal" font="default" size="100%">BioMoby Consortium</style></author></translated-authors></contributors><titles><title><style face="normal" font="default" size="100%">Interoperability with Moby 1.0--it's better than sharing your toothbrush!</style></title><secondary-title><style face="normal" font="default" size="100%">Brief Bioinform</style></secondary-title><alt-title><style face="normal" font="default" size="100%">Brief Bioinform</style></alt-title></titles><keywords><keyword><style  face="normal" font="default" size="100%">Computational Biology</style></keyword><keyword><style  face="normal" font="default" size="100%">Database Management Systems</style></keyword><keyword><style  face="normal" font="default" size="100%">Databases, Factual</style></keyword><keyword><style  face="normal" font="default" size="100%">Information Storage and Retrieval</style></keyword><keyword><style  face="normal" font="default" size="100%">Internet</style></keyword><keyword><style  face="normal" font="default" size="100%">Programming Languages</style></keyword><keyword><style  face="normal" font="default" size="100%">Systems Integration</style></keyword></keywords><dates><year><style  face="normal" font="default" size="100%">2008</style></year><pub-dates><date><style  face="normal" font="default" size="100%">2008 May</style></date></pub-dates></dates><volume><style face="normal" font="default" size="100%">9</style></volume><pages><style face="normal" font="default" size="100%">220-31</style></pages><language><style face="normal" font="default" size="100%">eng</style></language><abstract><style face="normal" font="default" size="100%">&lt;p&gt;The BioMoby project was initiated in 2001 from within the model organism database community. It aimed to standardize methodologies to facilitate information exchange and access to analytical resources, using a consensus driven approach. Six years later, the BioMoby development community is pleased to announce the release of the 1.0 version of the interoperability framework, registry Application Programming Interface and supporting Perl and Java code-bases. Together, these provide interoperable access to over 1400 bioinformatics resources worldwide through the BioMoby platform, and this number continues to grow. Here we highlight and discuss the features of BioMoby that make it distinct from other Semantic Web Service and interoperability initiatives, and that have been instrumental to its deployment and use by a wide community of bioinformatics service providers. The standard, client software, and supporting code libraries are all freely available at http://www.biomoby.org/.&lt;/p&gt;</style></abstract><issue><style face="normal" font="default" size="100%">3</style></issue><custom1><style face="normal" font="default" size="100%">https://www.ncbi.nlm.nih.gov/pubmed/18238804?dopt=Abstract</style></custom1></record></records></xml>