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Herrero J, Vaquerizas JM, Al-Shahrour F, et al. New challenges in gene expression data analysis and the extended GEPAS. Nucleic Acids Res. 2004;32:W485-91. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=15215434.\par \par Martin MJ, Herrero J, Mateos A, Dopazo J. Comparing bacterial genomes through conservation profiles. Genome Res. 2003;13:991-8. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12695324.\par \par Herrero J, Al-Shahrour F, Diaz-Uriarte R, et al. GEPAS: A web-based resource for microarray gene expression data analysis. Nucleic Acids Res. 2003;31:3461-7. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12824345.\par \par Al-Shahrour F, Herrero J, Mateos A, Santoyo J, D\'edaz-Uriarte R, Dopazo J. Using Gene Ontology on genome-scale studies to find significant associations of biologically relevant terms to group of genes. In:  Neural Networks for Signal Processing XIII. Neural Networks for Signal Processing XIII. New York, USA: IEEE Press; 2003:43-52.\par \par Mateos A, Herrero J, Tamames J, Dopazo J. Supervised Neural Networks For Clustering Conditions In DNA Array Data After Reducing Noise By Clustering Gene Expression Profiles. In:  Microarray data analysis II. Microarray data analysis II. Kluwer Academic; 2002:91-103.\par \par Mateos A, Dopazo J, Jansen R, Tu Y, Gerstein M, Stolovitzky G. Systematic learning of gene functional classes from DNA array expression data by using multilayer perceptrons. Genome Res. 2002;12:1703-15. Available at: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=12421757.\par \par Mateos A, Herrero J, Dopazo J. Using perceptrons for supervised classification of DNA microarray samples: obtaining the optimal level of information and finding differentially expressed genes. In:  ICANN 2002, LNCS 2415. ICANN 2002, LNCS 2415. J.R. Dorronsoro; 2002:577-582.\par \par }