@inbook {954,
	title = {Docencia en Estad{\'\i}stica: Experiencias de Innovaci{\'o}n},
	booktitle = {III Jornadas de Intercambio de Experiencias de Innovaci{\'o}n Educativa en Estad{\'\i}stica},
	volume = {1},
	year = {2013},
	pages = {201-210},
	issn = {978-84-9858-872-9},
	author = {Garcia-Garcia, Francisco and Montaner, David}
}
@inbook {19882272,
	title = {Functional profiling methods in cancer.},
	booktitle = {Methods in molecular biology (Clifton, N.J.)},
	volume = {576},
	year = {2010},
	month = {2010},
	pages = {363-74},
	abstract = {<p>The introduction of new high-throughput methodologies such as DNA microarrays constitutes a major breakthrough in cancer research. The unprecedented amount of data produced by such technologies has opened new avenues for interrogating living systems although, at the same time, it has demanded of the development of new data analytical methods as well as new strategies for testing hypotheses. A history of early successful applications in cancer boosted the use of microarrays and fostered further applications in other fields. Keeping the pace with these technologies, bioinformatics offers new solutions for data analysis and, what is more important, permits the formulation of a new class of hypotheses inspired in systems biology, more oriented to pathways or, in general, to modules of functionally related genes. Although these analytical methodologies are new, some options are already available and are discussed in this chapter.</p>},
	author = {Joaqu{\'\i}n Dopazo},
	editor = {Gr{\"u}tzmann, Robert and Pilarsky, Christian}
}
@inbook {761,
	title = {Gen{\'o}mica Comparativa y Selecci{\'o}n Natural. Aplicaciones en el Genoma Humano. Cap{\'\i}tulo 1.6},
	booktitle = {Evoluci{\'o}n y Adaptac{\'o}n. 150 a{\~n}os despu{\'e}s del Origen de las Especies},
	year = {2009},
	pages = {51-59},
	publisher = {Obrapropia.},
	organization = {Obrapropia.},
	chapter = {19},
	address = {Valencia},
	abstract = {<p>La b\&uacute;squeda de los eventos adaptativos a nivel molecular que ha diferenciado el genoma humano del de nuestro pariente vivo m\&aacute;s cercano, el chimpanc\&eacute;, ha sido una de las \&aacute;reas de mayor investigaci\&oacute;n en gen\&oacute;mica comparativa. Paralelamente, la predicci\&oacute;n funcional de variantes gen\&eacute;ticas en nuestra especie ha sido un \&aacute;rea de intenso desarrollo en bioinform\&aacute;tica. En este trabajo discutiremos resultados previos y otros m\&aacute;s recientes que dan cuenta de estos desarrollos. Veremos que en todos los casos la estimaci\&oacute;n de las presiones selectivas a nivel de los genes individuales o de los residuos de las prote\&iacute;nas son el denominador com\&uacute;n para discutir ambos aspectos. Finalmente mostraremos c\&oacute;mo el an\&aacute;lisis de estas presiones selectivas por grupos funcionales de genes resulta una alternativa viable y con suficiente poder estad\&iacute;stico para el an\&aacute;lisis de la adaptaci\&oacute;n y de las restricciones evolutivas a nivel gen\&oacute;mico.\&nbsp;</p>},
	issn = {978-84-92910-06-9},
	author = {Serra, Fran{\c c}ois and Arbiza, L. and H. Dopazo},
	editor = {H. Dopazo and Navarro, A.}
}
@inbook {684,
	title = {Protein Interactions for Functional Genomics},
	booktitle = {Biological Data Mining in Protein Interaction Networks},
	year = {2009},
	pages = {223-238},
	publisher = {Idea Group Inc (IGI)},
	organization = {Idea Group Inc (IGI)},
	address = {Hershey, USA},
	issn = {1605663980, 978160566398},
	url = {http://books.google.es/books?id=pNyCy5GsqtkC},
	author = {Minguez, P. and Dopazo, J.},
	editor = {Li, Xiao-Li and Ng, See-Kiong}
}
@inbook {469,
	title = {Structural Comparison and Alignment},
	booktitle = {Structural Bioinformatics},
	year = {2009},
	publisher = {Wiley-Blackwell},
	organization = {Wiley-Blackwell},
	edition = {2nd},
	address = {New Jersey. USA},
	keywords = {Structural Bioinformatics},
	url = {http://www.amazon.com/gp/product/0470181052/},
	author = {M. A. Marti-Renom and E. Capriotti and Shindyalov, I. and Bourne, P.}
}
@inbook {474,
	title = {Assessment of protein structure predictions},
	booktitle = {Computational Structural Biology},
	year = {2008},
	publisher = {World Scientific Publishing Company},
	organization = {World Scientific Publishing Company},
	address = {New Jersey, USA},
	url = {http://www.amazon.com/dp/9812778772/},
	author = {E. Capriotti and M. A. Marti-Renom}
}
@inbook {473,
	title = {Comparative genomics-based prediction of protein function},
	booktitle = {Methods in Molecular Biology},
	volume = {439},
	year = {2008},
	publisher = {M. Starkey and R. Elaswarapu, Humana press},
	organization = {M. Starkey and R. Elaswarapu, Humana press},
	url = {http://www.springerprotocols.com/Abstract/doi/10.1007/978-1-59745-188-8_26},
	author = {Gabald{\'o}n, T.}
}
@inbook {472,
	title = {The core of a minimal gene set: insights from natural reduced genomes},
	booktitle = {Protocells: Bridging nonliving and living matter},
	year = {2008},
	pages = {347-366},
	publisher = {The MIT Press},
	organization = {The MIT Press},
	address = {USA},
	author = {Gabald{\'o}n, T. and Gil, R. and Peret{\'o}, J. and Latorre, A. and Moya, A.}
}
@inbook {471,
	title = {Selective Constraints and Human Disease Genes: Evolutionary and Bioinformatic Approaches},
	booktitle = {Encyclopedia of Life Science},
	year = {2008},
	publisher = {John Wiley \& Sons, Ltd.},
	organization = {John Wiley \& Sons, Ltd.},
	address = {UK},
	doi = {10.1002/9780470015902.a0020762},
	author = {H. Dopazo}
}
@inbook {470,
	title = {Selective Constraints on Human Disease Mutations and Polymorphisms},
	booktitle = {Handbook of Human Molecular Evolution},
	year = {2008},
	publisher = {Hildegard Kehrer-Sawatzki \& David N. Cooper. John Wiley \& Sons, Ltd},
	organization = {Hildegard Kehrer-Sawatzki \& David N. Cooper. John Wiley \& Sons, Ltd},
	address = {UK},
	url = {http://eu.wiley.com/WileyCDA/WileyTitle/productCd-0470517468,descCd-description.html},
	author = {H. Dopazo}
}
@inbook {477,
	title = {Clustering - Class discovery in the post-genomic era},
	booktitle = {Fundamentals of data mining in genomics and proteomics},
	year = {2007},
	publisher = {Springer-Verlag, W. Dubitzky, M. Granzow and D.P. Berrar},
	organization = {Springer-Verlag, W. Dubitzky, M. Granzow and D.P. Berrar},
	address = {New York, USA},
	author = {Dopazo, J.}
}
@inbook {479,
	title = {f single nucleotide polymorphism arrays: Design, tools and applications},
	booktitle = {Microarray Technology Through Applications},
	year = {2007},
	publisher = {Taylor \& Francis, F. Falciani},
	organization = {Taylor \& Francis, F. Falciani},
	address = {New York, USA},
	author = {M. Robledo and Gonz{\'a}lez-Neira, A and Dopazo, J.}
}
@inbook {478,
	title = {Functional annotation of microarray experiments},
	booktitle = {Microarray Technology Through Applications},
	year = {2007},
	publisher = {Taylor \& Francis, F. Falciani},
	organization = {Taylor \& Francis, F. Falciani},
	address = {New York, USA},
	author = {Dopazo, J. and Fatima Al-Shahrour}
}
@inbook {475,
	title = {Microarray Technology in Agricultural Research},
	booktitle = {Microarray Technology Through Applications},
	year = {2007},
	pages = {173-209},
	publisher = {F. Falciani. Publisher: Taylor and Francis Group},
	organization = {F. Falciani. Publisher: Taylor and Francis Group},
	keywords = {babelomics},
	issn = {0-4153-7853-2},
	author = {A. Conesa and J. Forment and J. Gadea and van Dijk, J.}
}
@inbook {680,
	title = {New Trends in the Analysis of Functional Genomic Data},
	booktitle = {Progress in Industrial Mathematics at ECMI 2006},
	volume = {12},
	year = {2007},
	pages = {576-580},
	publisher = {Springer},
	organization = {Springer},
	address = {Berlin},
	issn = {978-3-540-71991-5},
	doi = {10.1007/978-3-540-71992-2_94},
	url = {http://www.springerlink.com/content/m62p07r8111004vr/},
	author = {Montaner, D. and Fatima Al-Shahrour and Dopazo, J.}
}
@inbook {476,
	title = {Reconstruction of ancestral proteomes},
	booktitle = {Ancestral Sequence Reconstruction},
	year = {2007},
	publisher = {D. Liberles},
	organization = {D. Liberles},
	address = {Oxford},
	url = {http://www.us.oup.com/us/catalog/general/subject/LifeSciences/EvolutionaryBiology/?view=usa\&ci=9780199299188},
	author = {Gabald{\'o}n, T. and M. A. Huynen}
}
@inbook {480,
	title = {La clasificaci{\'o}n de los organismos},
	booktitle = {Invitaci{\'o}n a la Biolog{\'\i}a},
	year = {2006},
	publisher = {Curtis, Barnes, Schnek \& Flores. 2da, Editorial Medica Panamericana},
	organization = {Curtis, Barnes, Schnek \& Flores. 2da, Editorial Medica Panamericana},
	chapter = {22},
	address = {Buenos Aires},
	author = {H. Dopazo}
}
@inbook {481,
	title = {Reliable and specific protein function prediction by combining homology with genomic(s) context},
	booktitle = {Discovery of biomolecular mechanisms with theoretical data analyses},
	year = {2006},
	publisher = {F. Eisenhaber, Landes Bioscience},
	organization = {F. Eisenhaber, Landes Bioscience},
	issn = {0-387-34527},
	url = {http://www.landesbioscience.com/iu/output.php?id=479},
	author = {M. A. Huynen and B. Snel and Gabald{\'o}n T}
}
@inbook {482,
	title = {Data analysis and visualisation in genomics and proteomics},
	year = {2005},
	publisher = {Wiley, F. Azuaje and J. Dopazo},
	organization = {Wiley, F. Azuaje and J. Dopazo},
	keywords = {babelomics},
	author = {F. Azuaje and Dopazo, J.}
}
@inbook {489,
	title = {Data and Predictive Model Integration: an Overview of Key Concepts, Problems and Solutions},
	booktitle = {Data analysis and visualisation in genomics and proteomics},
	year = {2005},
	publisher = {Wiley, F. Azuaje and J. Dopazo},
	organization = {Wiley, F. Azuaje and J. Dopazo},
	author = {F. Azuaje and Dopazo, J. and Wang, H}
}
@inbook {488,
	title = {Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges},
	booktitle = {Data analysis and visualisation in genomics and proteomics},
	year = {2005},
	pages = {3-9},
	publisher = {Wiley, F. Azuaje and J. Dopazo},
	organization = {Wiley, F. Azuaje and J. Dopazo},
	author = {F. Azuaje and Dopazo, J.}
}
@inbook {485,
	title = {Ontologies and functional genomics},
	booktitle = {Data analysis and visualisation in genomics and proteomics},
	year = {2005},
	pages = {99-102},
	publisher = {Wiley, F. Azuaje and J. Dopazo},
	organization = {Wiley, F. Azuaje and J. Dopazo},
	author = {Fatima Al-Shahrour and Dopazo, J.}
}
@inbook {486,
	title = {Salinibacter ruber: genomics and biogeography},
	booktitle = {Adaptation to life in high salt concentrations in Archaea, Bacteria and Eukarya},
	volume = {9},
	year = {2005},
	pages = {257-266},
	publisher = {Nina Gunde-Cimerman, Ana Plemenitas, and Aharon Oren. Kluwer Academic Publishers},
	organization = {Nina Gunde-Cimerman, Ana Plemenitas, and Aharon Oren. Kluwer Academic Publishers},
	address = {Dordrecht, Netherlands},
	author = {Ant{\'o}n, J and Pe{\~n}a, A and Valens, M and Santos, F and Gl{\"o}ckner, F.O and Bauer, M and Dopazo, J. and Herrero, J. and Rossell{\'o}-Mora, R and Amann, R}
}
@inbook {490,
	title = {Gene expression Correlation and Gene Ontology-Based Similarity: An Assessment of Quantitative Relationship},
	booktitle = {IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology},
	year = {2004},
	pages = {25-31},
	author = {Wang, H and F. Azuaje and Bodenreider, O and Dopazo, J.}
}
@inbook {491,
	title = {Use of GO Terms to Understand the Biological Significance of Microarray Differential Gene Expression Data},
	booktitle = {Microarray data analysis III},
	year = {2003},
	pages = {233-247},
	publisher = {Kluwer Academic, K. F. Johnson and S. M. Lin},
	organization = {Kluwer Academic, K. F. Johnson and S. M. Lin},
	author = {D{\'\i}az-Uriarte, R and Fatima Al-Shahrour and Dopazo, J.}
}
@inbook {492,
	title = {Using Gene Ontology on genome-scale studies to find significant associations of biologically relevant terms to group of genes},
	booktitle = {Neural Networks for Signal Processing XIII},
	year = {2003},
	pages = {43-52},
	publisher = {IEEE Press},
	organization = {IEEE Press},
	address = {New York, USA},
	keywords = {babelomics},
	author = {Fatima Al-Shahrour and Herrero, J. and A. Mateos and J. Santoyo and D{\'\i}az-Uriarte, R and Dopazo, J.}
}
@inbook {494,
	title = {Microarray Data Processing And Analysis},
	booktitle = {Microarray data analysis II},
	year = {2002},
	pages = {43-63},
	publisher = {Kluwer Academic},
	organization = {Kluwer Academic},
	author = {Dopazo, J.}
}
@inbook {495,
	title = {Supervised Neural Networks For Clustering Conditions In DNA Array Data After Reducing Noise By Clustering Gene Expression Profiles},
	booktitle = {Microarray data analysis II},
	year = {2002},
	pages = {91-103},
	publisher = {Kluwer Academic},
	organization = {Kluwer Academic},
	author = {A. Mateos and Herrero, J. and J. Tamames and Dopazo, J.}
}
@inbook {496,
	title = {Using perceptrons for supervised classification of DNA microarray samples: obtaining the optimal level of information and finding differentially expressed genes},
	booktitle = {ICANN 2002, LNCS 2415},
	year = {2002},
	pages = {577-582},
	publisher = {J.R. Dorronsoro},
	organization = {J.R. Dorronsoro},
	author = {A. Mateos and Herrero, J. and Dopazo, J.}
}
