@article {539,
	title = {Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.},
	journal = {Nucleic Acids Res},
	volume = {39},
	year = {2011},
	month = {2011 Jul},
	pages = {W470-4},
	abstract = {<p>Phylemon 2.0 is a new release of the suite of web tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. It has been designed as a response to the increasing demand of molecular sequence analyses for experts and non-expert users. Phylemon 2.0 has several unique features that differentiates it from other similar web resources: (i) it offers an integrated environment that enables evolutionary analyses, format conversion, file storage and edition of results; (ii) it suggests further analyses, thereby guiding the users through the web server; and (iii) it allows users to design and save phylogenetic pipelines to be used over multiple genes (phylogenomics). Altogether, Phylemon 2.0 integrates a suite of 30 tools covering sequence alignment reconstruction and trimming; tree reconstruction, visualization and manipulation; and evolutionary hypotheses testing.</p>},
	keywords = {Evolution, Molecular, Genomics, Internet, Phylogeny, Sequence Alignment, Software},
	issn = {1362-4962},
	doi = {10.1093/nar/gkr408},
	author = {S{\'a}nchez, Rub{\'e}n and Serra, Fran{\c c}ois and T{\'a}rraga, Joaqu{\'\i}n and Medina, Ignacio and Carbonell, Jos{\'e} and Pulido, Luis and De Maria, Alejandro and Capella-Gut{\'\i}errez, Salvador and Huerta-Cepas, Jaime and Gabald{\'o}n, Toni and Dopazo, Joaquin and Dopazo, Hern{\'a}n}
}
@article {21412950,
	title = {Phylogenetic and in silico structural analysis of the Parkinson disease-related kinase PINK1.},
	journal = {Human mutation},
	volume = {32},
	year = {2011},
	month = {2011 Apr},
	pages = {369-78},
	abstract = {<p>Parkinson disease (PD) is the second most common neurodegenerative disorder and is characterized by the loss of dopaminergic neurons in the substantia nigra. Mutations in PINK1 were shown to cause recessive familial PD, and today are proposed to be associated with the disease via mitochondrial dysfunction and oxidative damage. The PINK1 gene comprises eight exons, which encode a ubiquitously expressed 581 amino acid protein that contains an N-terminal mitochondrial targeting domain and a serine/threonine protein kinase. To better understand the relationship between PINK1 and PD we have first analyzed the evolutionary history of the gene showing its late emergence in evolution. In addition, we have modeled the three-dimensional structure of PINK1 and found some evidences that help to explain the effect of some PD-related mutations in this protein{\textquoteright}s function.</p>},
	doi = {10.1002/humu.21444},
	author = {Cardona, Fernando and S{\'a}nchez-Mut, Jose Vicente and Dopazo, Hern{\'a}n and P{\'e}rez-Tur, Jordi}
}
