@article {728,
	title = {DOME: recommendations for supervised machine learning validation in biology.},
	journal = {Nat Methods},
	volume = {18},
	year = {2021},
	month = {2021 10},
	pages = {1122-1127},
	keywords = {Algorithms, Computational Biology, Guidelines as Topic, Humans, Models, Biological, Research Design, Supervised Machine Learning},
	issn = {1548-7105},
	doi = {10.1038/s41592-021-01205-4},
	author = {Walsh, Ian and Fishman, Dmytro and Garcia-Gasulla, Dario and Titma, Tiina and Pollastri, Gianluca and Harrow, Jennifer and Psomopoulos, Fotis E and Tosatto, Silvio C E}
}
@article {1211,
	title = {Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq).},
	journal = {Nature communications},
	volume = {7},
	year = {2016},
	month = {2016},
	pages = {12339},
	abstract = {Long non-coding RNAs (lncRNAs) constitute a large, yet mostly uncharacterized fraction of the mammalian transcriptome. Such characterization requires a comprehensive, high-quality annotation of their gene structure and boundaries, which is currently lacking. Here we describe RACE-Seq, an experimental workflow designed to address this based on RACE (rapid amplification of cDNA ends) and long-read RNA sequencing. We apply RACE-Seq to 398 human lncRNA genes in seven tissues, leading to the discovery of 2,556 on-target, novel transcripts. About 60\% of the targeted loci are extended in either 5{\textquoteright} or 3{\textquoteright}, often reaching genomic hallmarks of gene boundaries. Analysis of the novel transcripts suggests that lncRNAs are as long, have as many exons and undergo as much alternative splicing as protein-coding genes, contrary to current assumptions. Overall, we show that RACE-Seq is an effective tool to annotate an organism{\textquoteright}s deep transcriptome, and compares favourably to other targeted sequencing techniques.},
	issn = {2041-1723},
	doi = {10.1038/ncomms12339},
	url = {http://www.nature.com/articles/ncomms12339},
	author = {Lagarde, Julien and Uszczynska-Ratajczak, Barbara and Santoyo-L{\'o}pez, Javier and Gonzalez, Jose Manuel and Tapanari, Electra and Mudge, Jonathan M and Steward, Charles A and Wilming, Laurens and Tanzer, Andrea and Howald, C{\'e}dric and Chrast, Jacqueline and Vela-Boza, Alicia and Antonio Rueda and L{\'o}pez-Domingo, Francisco J and Dopazo, Joaquin and Reymond, Alexandre and Guig{\'o}, Roderic and Harrow, Jennifer}
}
@article {559,
	title = {Extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing (RACE-Seq)},
	journal = {Nature Communications},
	volume = {7},
	year = {2016},
	month = {Jan-11-2016},
	doi = {10.1038/ncomms12339},
	url = {http://www.nature.com/articles/ncomms12339http://www.nature.com/articles/ncomms12339.pdfhttp://www.nature.com/articles/ncomms12339.pdfhttp://www.nature.com/articles/ncomms12339},
	author = {Lagarde, Julien and Uszczynska-Ratajczak, Barbara and Santoyo-L{\'o}pez, Javier and Gonzalez, Jose Manuel and Tapanari, Electra and Mudge, Jonathan M. and Steward, Charles A. and Wilming, Laurens and Tanzer, Andrea and Howald, C{\'e}dric and Chrast, Jacqueline and Vela-Boza, Alicia and Rueda, Antonio and Lopez-Domingo, Francisco J. and Dopazo, Joaquin and Reymond, Alexandre and Guig{\'o}, Roderic and Harrow, Jennifer}
}
